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A stable isotope labelled (SIL) form of an analyte protein is widely regarded as the optimal internal standard (IS) for absolute quantification of proteins using LC-MS; SIL proteins are often cited as being the “gold standard IS”.
SIL proteins have the same physiochemical behavior as the target proteins analyte. The internal standard can be introduced at the start of the sample preparation workflow and will be processed along with the analyte protein throughout the entire analytical procedure. This allows control for variations due to immunoaffinity or other isolation techniques, enzymatic digestion, other pre-analytical treatments as well as the LC and mass spectrometric ionization.
EMA guidelines recommend the use of a SIL-protein IS whenever possible for LC-MS/MS methods. Beyond this, there is a growth in scientific literature that strongly supports the use of full length, recombinant SIL proteins as internal standards.
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